Epigenetic silencing in tumors

Epigenetic gene silencing in cancer.

Epigenetic silencing in transgenic plants

Epigenetic silencing is a natural phenomenon in which the expression of genes is regulated through modifications of DNA, RNA, or histone proteins. It is a mechanism for defending host genomes against the effects of transposable elements and viral infection, and acts as a modulator of expression of duplicated gene family members and as a silencer of transgenes. A major breakthrough in understand...

Epigenetic phenomena: Epigenetic phenomena: Paramutation and gene silencing in plants

Gene silencing is a widespread phenomenon in plants, and can affect endogenous genes as well as transgenes integrated into the genome [1,2]. Gene silencing can be induced by interactions between related genes, and one of the best-known examples is named paramutation. Paramutation is the directed heritable alteration of one allele following exposure to another allele in a heterozygote [3]. Examp...

Synthetic reversal of epigenetic silencing.

Controlling cell fate-determining gene expression is key to stem cell differentiation, tissue regeneration, and cancer therapy. To date, custom-built transcription factors recognize the information encoded in specific DNA sequences. Chromatin proteins undergo covalent modifications and form complexes that encode a second layer of information that determines proximal gene activity. Here, we empl...

Inheritance of epigenetic chromatin silencing.

Maintenance of alternative chromatin states through cell divisions pose some fundamental constraints on the dynamics of histone modifications. In this paper, we study the systems biology of epigenetic inheritance by defining and analyzing general classes of mathematical models. We discuss how the number of modification states involved plays an essential role in the stability of epigenetic state...